EMBL European Bioinformatics Institute

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如何生成ssr节点

(Release 9, March 2013, 109 species, 15,736 families)

TreeFam is a database composed of phylogenetic trees inferred from animal genomes. It provides orthology/parology predictions as well the evolutionary history of genes.
(see the BRCA2 gene family page as an example).

如何生成ssr节点

(HMM-based protein sequence search vs. TreeFam & Pfam HMMs)
Insert into tree
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Parsimony (green加速器安卓破解版super-fast, citing_treefammight insert into several branches)
Maximum Likelihood (citing_treefammore accurate, citing_treefammight take a bit longer)

如何生成ssr节点

Species Tree used in TreeFam 9. See full tree here.

如何生成ssr节点

如何生成ssr节点

  • citing_treefam Feature: TreeFam family visualisation available: [...]
    (posted 19 Feb 2014)
  • citing_treefam Feature: Tree Insertion available: [...]
    (posted 9 Sept 2013)
  • sgreen科学加速器 Suggestion: Downloading the full gene tree view: [...]
    (posted 3 May 2013)
  • green加速器安卓破解版 Suggestion: Domain diagrams as hyperlinks to Pfam: Sgreen加速器官网
    (posted 3 May 2013)
  • 天眼加速器和express TreeFam 9 is now available: [...]
    (posted 3 May 2013)
  • citing_treefamexpress加速器安卓_express加速器安卓在线观看-工成视频网:express加速器安卓视频在线观看 00:46 最新 神将传奇 神将传奇ol 加速器 演示 --疯狗安卓手游加速器 01:20 迅游手游加速器与华为、小米等多家公司达成合作 02:03 永久免费的网游加速器, 支持375个大型游戏, 手机和电脑都有! 01:52 怎样解决steam手机APP[...]
    (posted 10 December 2012)
  • sgreen科学加速器 We are on the move: [...]
    express加速器安卓版下载
  • sgreen科学加速器安卓快喵安装包__快喵加速器安卓安装包_快喵vpv安卓:2021-4-21 · 快喵安卓版 express加速器怎么设置快喵加速器下载安装蜜蜂窝加速小白加速破解快喵安卓版 bibibi加速器下载安装鲸鱼时代app下载好用的手机梯子软件快区加速器百度网盘国内怎么上国外...[...]
    (posted 27 March 2012)

如何生成ssr节点

Learn about how TreeFam builds families, alignments, and trees and how families defined in TreeFam.


如何生成ssr节点

TreeFam families
There are many ways you can link to TreeFam data. Learn how you can link to e.g. our gene families.

Gene tree widget
You can add our 云帆加速安卓版 to your website: e.g. simply point an iframe to our trees using a TreeFam family ID or a sequence identifier.


如何生成ssr节点

Protein domains:
RNA families: sgreen安卓安装包
Repetitive DNA:
Peptidases: express科学加速器ios
Spurious ORFs:

sgreen科学加速器

Data download
Download all our data: e.g. alignments, hmms, trees, pairwise orthologs, external references and more.

API
Programmatically fetch data through our API and see a list of example scripts in our github repository. Use treefamscan to score your sequences against TreeFam hmms.

Citing
If you find TreeFam useful, please consider citing the references that describe this work:
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doi: 10.1093/nar/gkm1005